[Oct31 08:01:36] 1OAN_A
[Oct30 09:23:45] 3BIK_A
[Sep30 15:24:36] 3FVC_A
[Sep28 15:15:57] 2Z0L_A
[Aug08 13:50:57] 9SSS_A
[DiscoTope]        Epitome        IEDB        

This dataset was retrieved and rearranged from supplementary materials of paper “Prediction of residues in discontinuous B cell epitopes using protein 3D structures,” by Pernille Haste Andersen, Morten Nielsen and Ole Lund, Protein Science, 15:2558-2567, 2006. Please connect to http://www.cbs.dtu.dk/suppl/immunology/DiscoTope.php for downloading original versions which include five data test sets applied in the paper. (DiscoTope_residues.zip)

1a14:N1a2y:C1ar1:B1bj1:W1bql:Y
1bvk:C1c08:C1cz8:W1dqj:C1dzb:X
1egj:A1eo8:A1ezv:E1fdl:Y1fe8:A
1fj1:F1fns:A1fsk:A1g7h:C1g7i:C
1g7j:C1g7l:C1g7m:C1g9m:G1g9n:G
1gc1:G1h0d:C1ic4:Y1ic5:Y1ic7:Y
1iqd:C1j1o:Y1j1p:Y1j1x:Y1jhl:A
1jps:T1jrh:I1k4c:C1k4d:C1kip:C
1kiq:C1kir:C1kyo:E1lk3:A1mel:L
1mhp:A1mlc:E1n8z:C1nby:C1nbz:C
1nca:N1ncb:N1ncc:N1ncd:N1ndg:C
1ndm:C1nfd:B1nmc:N1oak:A1oaz:A
1ors:C1osp:O1ots:A1qfu:A1rzj:G
1rzk:G1tpx:A1tqb:A1tqc:A1ty6:A
1tzh:V1xiw:A2hmi:B2jel:P3hfl:Y
SEPPA server: With 3D protein structure as input, each residue in the query protein will be given a score according to its neighborhood residues information.Higher score corresponds to higher probability the residue to be involved in an epitope.
DiscoTope Server utilizes calculation of surface accessibility (estimated in terms of contact numbers) and a novel epitope propensity amino acid score.
BEpro(PEPITO) uses a combination of amino-acid propensity scores and half sphere exposure values at multiple distances to achieve state-of-the-art performance.
SAVE system,Protein-Ligand Binding region prediction based on features of Solid Angle,Volume,and Depth
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AIR system, an efficient and effective tool for multiple structure alignment (MStA).
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