[Aug08 13:50:57] 9SSS_A
[Aug08 13:23:57] 9RRR_A
[Aug08 13:40:56] 9QQQ_A
[Aug08 13:57:55] 9PPP_A
[Aug08 13:34:53] 9OOO_A
DiscoTope        [Epitome]        IEDB        

This dataset was retrieved and rearranged from the database of the paper “ Epitome: database of structure-inferred antigenic epitopes,” by Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost, Nucleic Acids Research. 34 Database Issue:D777-D780, 2006. Please connect to http://www.rostlab.org/services/epitome/ for downloading its original data which contains most antigen/antibody complex structures, and detail descriptions of the interaction of a residue on the antigenic protein and a residue in a complementarity determining region. (Epitome_residues.zip)

1a14:N1a2y:C1ar1:B1bgx:T1bj1:V
1bj1:W1bql:Y1bvk:C1bvk:F1c08:C
1cz8:V1cz8:W1dqj:C1dzb:X1dzb:Y
1egj:A1eo8:A1ezv:E1fbi:X1fbi:Y
1fdl:Y1fe8:A1fe8:B1fe8:C1fns:A
1g6v:A1g7h:C1g7i:C1g7j:C1g7l:C
1g7m:C1g9m:G1g9n:G1gc1:G1h0d:C
1hys:B1i9r:A1i9r:B1i9r:C1ic4:Y
1ic5:Y1ic7:Y1iqd:C1j1o:Y1j1p:Y
1j1x:Y1j5o:B1jhl:A1jps:T1jrh:I
1jto:L1jto:M1jtp:L1jtp:M1jtt:L
1k4c:C1k4d:C1kb9:E1ken:A1ken:C
1ken:E1kip:C1kiq:C1kir:C1kxq:A
1kxq:B1kxq:C1kxq:D1kxt:A1kxt:C
1kxt:E1kxv:A1kxv:B1kyo:E1kyo:P
1mel:L1mel:M1mhp:A1mhp:B1mlc:E
1mlc:F1mvf:D1mvf:E1n5y:B1n6q:B
1n8z:C1nby:C1nbz:C1nca:N1ncb:N
1ncc:N1ncd:N1ndg:C1ndm:C1nma:N
1nmb:N1nmc:A1nmc:N1nsn:S1oak:A
1ob1:C1ob1:F1op9:B1orq:C1ors:C
1ots:A1ots:B1ott:A1ott:B1otu:A
1otu:B1p2c:C1p84:E1qfu:A1qfw:A
1qle:B1r3i:C1r3j:C1r3k:C1r3l:C
1rvf:11rvf:21rvf:31rzj:G1rzk:G
1ua6:Y1v7m:V1v7n:I1v7n:J1v7n:K
1v7n:V1v7n:X1vfb:C1wej:F2hmi:B
2iff:Y2jel:P2vir:C2vis:C2vit:C
SEPPA server: With 3D protein structure as input, each residue in the query protein will be given a score according to its neighborhood residues information.Higher score corresponds to higher probability the residue to be involved in an epitope.
DiscoTope Server utilizes calculation of surface accessibility (estimated in terms of contact numbers) and a novel epitope propensity amino acid score.
BEpro(PEPITO) uses a combination of amino-acid propensity scores and half sphere exposure values at multiple distances to achieve state-of-the-art performance.
SAVE system,Protein-Ligand Binding region prediction based on features of Solid Angle,Volume,and Depth
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AIR system, an efficient and effective tool for multiple structure alignment (MStA).
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